Detailed information of SNP:
SNP ID:
sf1120754609(Gbrowse)
Chromosome: chr11 Position: 20754609 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 51.52% | 48.48% |
All Indica | 798 | 20.05% | 79.95% |
All Japonica | 497 | 96.18% | 3.82% |
Aus | 66 | 75.76% | 24.24% |
Indica I | 374 | 27.27% | 72.73% |
Indica II | 213 | 7.04% | 92.96% |
Indica Intermediate | 211 | 20.38% | 79.62% |
Temperate Japonica | 335 | 96.42% | 3.58% |
Tropical Japonica | 94 | 95.74% | 4.26% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1120754609 | C->T | INTERGENIC | None |