Detailed information of SNP:



SNP ID: sf1120754609(Gbrowse)

Chromosome: chr11

Position: 20754609
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 51.52% 48.48%
All Indica798 20.05% 79.95%
All Japonica497 96.18% 3.82%
Aus66 75.76% 24.24%
Indica I374 27.27% 72.73%
Indica II213 7.04% 92.96%
Indica Intermediate211 20.38% 79.62%
Temperate Japonica335 96.42% 3.58%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1120754609 C->T INTERGENIC None