Detailed information of SNP:
|
SNP ID:
sf1120757239(Gbrowse)
Chromosome: chr11 Position: 20757239 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.01% | 10.99% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 497 | 77.87% | 22.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120757239 | G->A | INTERGENIC | None |