Detailed information of SNP:
|
SNP ID:
sf1120780522(Gbrowse)
Chromosome: chr11 Position: 20780522 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.10% | 7.90% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 496 | 82.46% | 17.54% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 82.93% | 17.07% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120780522 | G->A | LOC_Os11g36140(LOC_Os11g36140.1) | Non-Synonymous SNP |