Detailed information of SNP:
|
SNP ID:
sf1120784557(Gbrowse)
Chromosome: chr11 Position: 20784557 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 82.00% | 18.00% |
| All Indica | 799 | 95.62% | 4.38% |
| All Japonica | 496 | 61.69% | 38.31% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120784557 | C->A | INTERGENIC | None |