Detailed information of SNP:
|
SNP ID:
sf1120814359(Gbrowse)
Chromosome: chr11 Position: 20814359 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 63.37% | 36.63% |
| All Indica | 770 | 55.19% | 44.81% |
| All Japonica | 493 | 81.95% | 18.05% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 364 | 66.48% | 33.52% |
| Indica II | 209 | 39.23% | 60.77% |
| Indica Intermediate | 197 | 51.27% | 48.73% |
| Temperate Japonica | 333 | 82.88% | 17.12% |
| Tropical Japonica | 93 | 74.19% | 25.81% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120814359 | T->C | INTERGENIC | None |