Detailed information of SNP:
|
SNP ID:
sf1120840717(Gbrowse)
Chromosome: chr11 Position: 20840717 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 72.38% | 27.62% |
| All Indica | 798 | 92.61% | 7.39% |
| All Japonica | 496 | 34.88% | 65.12% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 26.87% | 73.13% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120840717 | C->T | INTERGENIC | None |