Detailed information of SNP:
|
SNP ID:
sf1120849641(Gbrowse)
Chromosome: chr11 Position: 20849641 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 51.10% | 48.90% |
| All Indica | 766 | 32.51% | 67.49% |
| All Japonica | 490 | 83.88% | 16.12% |
| Aus | 59 | 37.29% | 62.71% |
| Indica I | 358 | 31.01% | 68.99% |
| Indica II | 200 | 19.50% | 80.50% |
| Indica Intermediate | 208 | 47.60% | 52.40% |
| Temperate Japonica | 331 | 86.10% | 13.90% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 10 | 10.00% | 90.00% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120849641 | T->C | LOC_Os11g36220(LOC_Os11g36220.1) | Synonymous |