Detailed information of SNP:
|
SNP ID:
sf1120851925(Gbrowse)
Chromosome: chr11 Position: 20851925 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1318 | 87.25% | 12.75% |
| All Indica | 727 | 84.04% | 15.96% |
| All Japonica | 484 | 93.60% | 6.40% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 364 | 94.51% | 5.49% |
| Indica II | 191 | 68.59% | 31.41% |
| Indica Intermediate | 172 | 79.07% | 20.93% |
| Temperate Japonica | 324 | 95.37% | 4.63% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 6 | 33.33% | 66.67% |
| Intermediate | 36 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120851925 | T->A | INTERGENIC | None |