Detailed information of SNP:
|
SNP ID:
sf1120851941(Gbrowse)
Chromosome: chr11 Position: 20851941 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1374 | 54.66% | 45.34% |
| All Indica | 773 | 70.76% | 29.24% |
| All Japonica | 490 | 29.39% | 70.61% |
| Aus | 62 | 54.84% | 45.16% |
| Indica I | 356 | 46.35% | 53.65% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 204 | 86.76% | 13.24% |
| Temperate Japonica | 333 | 22.52% | 77.48% |
| Tropical Japonica | 90 | 34.44% | 65.56% |
| Japonica Intermediate | 67 | 56.72% | 43.28% |
| Group VI/Aromatic | 8 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120851941 | A->G | INTERGENIC | None |