Detailed information of SNP:
|
SNP ID:
sf1120871692(Gbrowse)
Chromosome: chr11 Position: 20871692 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 66.93% | 33.07% |
| All Indica | 799 | 90.86% | 9.14% |
| All Japonica | 494 | 24.70% | 75.30% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 375 | 81.07% | 18.93% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 17.96% | 82.04% |
| Tropical Japonica | 92 | 41.30% | 58.70% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120871692 | A->G | LOC_Os11g36240(LOC_Os11g36240.1) | Non-Synonymous SNP |