Detailed information of SNP:
|
SNP ID:
sf1120874243(Gbrowse)
Chromosome: chr11 Position: 20874243 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 72.07% | 27.93% |
| All Indica | 795 | 56.48% | 43.52% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 374 | 62.03% | 37.97% |
| Indica II | 212 | 44.81% | 55.19% |
| Indica Intermediate | 209 | 58.37% | 41.63% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120874243 | G->A | INTERGENIC | None |