Detailed information of SNP:
|
SNP ID:
sf1120880060(Gbrowse)
Chromosome: chr11 Position: 20880060 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 57.98% | 42.02% |
| All Indica | 788 | 85.91% | 14.09% |
| All Japonica | 495 | 13.94% | 86.06% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 367 | 79.02% | 20.98% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 208 | 88.46% | 11.54% |
| Temperate Japonica | 335 | 14.33% | 85.67% |
| Tropical Japonica | 92 | 14.13% | 85.87% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120880060 | T->C | INTERGENIC | None |