Detailed information of SNP:
|
SNP ID:
sf1120891461(Gbrowse)
Chromosome: chr11 Position: 20891461 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 95.15% | 4.85% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 484 | 86.36% | 13.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 93.67% | 6.33% |
| Tropical Japonica | 91 | 76.92% | 23.08% |
| Japonica Intermediate | 61 | 60.66% | 39.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120891461 | G->A | LOC_Os11g36280(LOC_Os11g36280.1) | Non-Synonymous SNP |