Detailed information of SNP:
|
SNP ID:
sf1120908129(Gbrowse)
Chromosome: chr11 Position: 20908129 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 70.06% | 29.94% |
| All Indica | 796 | 50.38% | 49.62% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 46.26% | 53.74% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 209 | 61.24% | 38.76% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120908129 | G->A | INTERGENIC | None |