Detailed information of SNP:
|
SNP ID:
sf1120908659(Gbrowse)
Chromosome: chr11 Position: 20908659 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 65.34% | 34.66% |
| All Indica | 795 | 49.31% | 50.69% |
| All Japonica | 496 | 92.34% | 7.66% |
| Aus | 61 | 47.54% | 52.46% |
| Indica I | 374 | 46.79% | 53.21% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 208 | 48.56% | 51.44% |
| Temperate Japonica | 334 | 92.81% | 7.19% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120908659 | C->T | INTERGENIC | None |