Detailed information of SNP:
|
SNP ID:
sf1120918889(Gbrowse)
Chromosome: chr11 Position: 20918889 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.55% | 40.45% |
| All Indica | 799 | 87.48% | 12.52% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 80.53% | 19.47% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120918889 | A->G | INTERGENIC | None |