Detailed information of SNP:
|
SNP ID:
sf1120921516(Gbrowse)
Chromosome: chr11 Position: 20921516 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1279 | 92.89% | 7.11% |
| All Indica | 666 | 87.39% | 12.61% |
| All Japonica | 490 | 98.98% | 1.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 332 | 91.27% | 8.73% |
| Indica II | 155 | 80.00% | 20.00% |
| Indica Intermediate | 179 | 86.59% | 13.41% |
| Temperate Japonica | 330 | 99.09% | 0.91% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120921516 | C->T | LOC_Os11g36320(LOC_Os11g36320.1) | INTRON |