Detailed information of SNP:
|
SNP ID:
sf1120927217(Gbrowse)
Chromosome: chr11 Position: 20927217 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 95.36% | 4.64% |
| All Indica | 796 | 95.85% | 4.15% |
| All Japonica | 463 | 95.25% | 4.75% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 314 | 95.54% | 4.46% |
| Tropical Japonica | 86 | 90.70% | 9.30% |
| Japonica Intermediate | 63 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120927217 | C->T | INTERGENIC | None |