Detailed information of SNP:
|
SNP ID:
sf1120931138(Gbrowse)
Chromosome: chr11 Position: 20931138 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 65.36% | 34.64% |
| All Indica | 784 | 75.64% | 24.36% |
| All Japonica | 496 | 46.37% | 53.63% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 370 | 69.73% | 30.27% |
| Indica II | 207 | 80.19% | 19.81% |
| Indica Intermediate | 207 | 81.64% | 18.36% |
| Temperate Japonica | 334 | 38.92% | 61.08% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120931138 | G->A | INTERGENIC | None |