Detailed information of SNP:
|
SNP ID:
sf1120931242(Gbrowse)
Chromosome: chr11 Position: 20931242 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 64.01% | 35.99% |
| All Indica | 778 | 73.39% | 26.61% |
| All Japonica | 495 | 46.26% | 53.74% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 367 | 67.85% | 32.15% |
| Indica II | 208 | 77.40% | 22.60% |
| Indica Intermediate | 203 | 79.31% | 20.69% |
| Temperate Japonica | 333 | 38.74% | 61.26% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120931242 | A->C | INTERGENIC | None |