Detailed information of SNP:
|
SNP ID:
sf1120938541(Gbrowse)
Chromosome: chr11 Position: 20938541 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 75.90% | 24.10% |
| All Indica | 799 | 60.20% | 39.80% |
| All Japonica | 494 | 96.96% | 3.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 61.07% | 38.93% |
| Indica II | 213 | 58.69% | 41.31% |
| Indica Intermediate | 211 | 60.19% | 39.81% |
| Temperate Japonica | 332 | 95.78% | 4.22% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120938541 | C->T | INTERGENIC | None |