Detailed information of SNP:
|
SNP ID:
sf1120944640(Gbrowse)
Chromosome: chr11 Position: 20944640 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.35% | 25.65% |
| All Indica | 797 | 90.97% | 9.03% |
| All Japonica | 495 | 46.46% | 53.54% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 81.77% | 18.23% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 39.52% | 60.48% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120944640 | T->C | INTERGENIC | None |