Detailed information of SNP:
|
SNP ID:
sf1120944660(Gbrowse)
Chromosome: chr11 Position: 20944660 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 61.23% | 38.77% |
| All Indica | 797 | 89.71% | 10.29% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 374 | 79.41% | 20.59% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 14.63% | 85.37% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1120944660 | A->G | INTERGENIC | None |