Detailed information of SNP:
|
SNP ID:
sf1121002194(Gbrowse)
Chromosome: chr11 Position: 21002194 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 67.65% | 32.35% |
| All Indica | 799 | 47.18% | 52.82% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121002194 | C->T | INTERGENIC | None |