Detailed information of SNP:
|
SNP ID:
sf1121006304(Gbrowse)
Chromosome: chr11 Position: 21006304 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 53.95% | 46.05% |
| All Indica | 799 | 72.59% | 27.41% |
| All Japonica | 495 | 24.04% | 75.96% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 58.77% | 41.23% |
| Temperate Japonica | 334 | 18.26% | 81.74% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121006304 | G->A | INTERGENIC | None |