Detailed information of SNP:
|
SNP ID:
sf1121089476(Gbrowse)
Chromosome: chr11 Position: 21089476 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 70.67% | 29.33% |
| All Indica | 796 | 95.35% | 4.65% |
| All Japonica | 496 | 29.03% | 70.97% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 334 | 25.15% | 74.85% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121089476 | A->G | LOC_Os11g36530(LOC_Os11g36530.1) | INTRON |