Detailed information of SNP:
|
SNP ID:
sf1121093801(Gbrowse)
Chromosome: chr11 Position: 21093801 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1384 | 64.81% | 35.19% |
| All Indica | 784 | 92.35% | 7.65% |
| All Japonica | 480 | 17.50% | 82.50% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 369 | 90.51% | 9.49% |
| Indica II | 207 | 98.07% | 1.93% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 325 | 12.62% | 87.38% |
| Tropical Japonica | 91 | 32.97% | 67.03% |
| Japonica Intermediate | 64 | 20.31% | 79.69% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121093801 | G->T | INTERGENIC | None |