Detailed information of SNP:
|
SNP ID:
sf1121095059(Gbrowse)
Chromosome: chr11 Position: 21095059 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 57.68% | 42.32% |
| All Indica | 787 | 87.04% | 12.96% |
| All Japonica | 491 | 8.35% | 91.65% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 371 | 85.98% | 14.02% |
| Indica II | 207 | 92.27% | 7.73% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 333 | 7.21% | 92.79% |
| Tropical Japonica | 91 | 14.29% | 85.71% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121095059 | G->A | INTERGENIC | None |