Detailed information of SNP:
|
SNP ID:
sf1121095077(Gbrowse)
Chromosome: chr11 Position: 21095077 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 66.60% | 33.40% |
| All Indica | 785 | 95.80% | 4.20% |
| All Japonica | 493 | 17.44% | 82.56% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 366 | 96.99% | 3.01% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 208 | 92.79% | 7.21% |
| Temperate Japonica | 332 | 17.47% | 82.53% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121095077 | T->C | INTERGENIC | None |