Detailed information of SNP:
|
SNP ID:
sf1121148492(Gbrowse)
Chromosome: chr11 Position: 21148492 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1359 | 55.11% | 44.89% |
| All Indica | 757 | 29.33% | 70.67% |
| All Japonica | 490 | 95.10% | 4.90% |
| Aus | 63 | 47.62% | 52.38% |
| Indica I | 351 | 38.18% | 61.82% |
| Indica II | 203 | 19.70% | 80.30% |
| Indica Intermediate | 203 | 23.65% | 76.35% |
| Temperate Japonica | 331 | 96.68% | 3.32% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121148492 | G->A | INTERGENIC | None |