Detailed information of SNP:
|
SNP ID:
sf1121149574(Gbrowse)
Chromosome: chr11 Position: 21149574 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 96.76% | 3.24% |
| All Indica | 772 | 94.30% | 5.70% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 204 | 92.65% | 7.35% |
| Indica Intermediate | 197 | 93.40% | 6.60% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121149574 | A->T | LOC_Os11g36630(LOC_Os11g36630.1) | INTRON |