Detailed information of SNP:
|
SNP ID:
sf1121151462(Gbrowse)
Chromosome: chr11 Position: 21151462 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 82.68% | 17.32% |
| All Indica | 759 | 71.01% | 28.99% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 356 | 80.34% | 19.66% |
| Indica II | 204 | 59.80% | 40.20% |
| Indica Intermediate | 199 | 65.83% | 34.17% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121151462 | C->T | LOC_Os11g36630(LOC_Os11g36630.1) | Non-Synonymous SNP |