Detailed information of SNP:
|
SNP ID:
sf1121151497(Gbrowse)
Chromosome: chr11 Position: 21151497 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 77.96% | 22.04% |
| All Indica | 764 | 64.40% | 35.60% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 360 | 74.72% | 25.28% |
| Indica II | 205 | 50.73% | 49.27% |
| Indica Intermediate | 199 | 59.80% | 40.20% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121151497 | G->C | LOC_Os11g36630(LOC_Os11g36630.1) | Non-Synonymous SNP |