Detailed information of SNP:
|
SNP ID:
sf1121151649(Gbrowse)
Chromosome: chr11 Position: 21151649 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 98.07% | 1.93% |
| All Indica | 785 | 97.58% | 2.42% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 370 | 98.11% | 1.89% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121151649 | C->T | LOC_Os11g36630(LOC_Os11g36630.1) | Synonymous |