Detailed information of SNP:
|
SNP ID:
sf1121151662(Gbrowse)
Chromosome: chr11 Position: 21151662 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1296 | 75.00% | 25.00% |
| All Indica | 693 | 57.86% | 42.14% |
| All Japonica | 491 | 96.95% | 3.05% |
| Aus | 60 | 83.33% | 16.67% |
| Indica I | 317 | 62.78% | 37.22% |
| Indica II | 190 | 53.68% | 46.32% |
| Indica Intermediate | 186 | 53.76% | 46.24% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121151662 | C->T | LOC_Os11g36630(LOC_Os11g36630.1) | SNPs that introduce stop codons |