Detailed information of SNP:
|
SNP ID:
sf1121152349(Gbrowse)
Chromosome: chr11 Position: 21152349 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 61.64% | 38.36% |
| All Indica | 772 | 90.03% | 9.97% |
| All Japonica | 483 | 13.66% | 86.34% |
| Aus | 64 | 78.12% | 21.88% |
| Indica I | 360 | 85.28% | 14.72% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 327 | 8.26% | 91.74% |
| Tropical Japonica | 89 | 30.34% | 69.66% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121152349 | C->A | INTERGENIC | None |