Detailed information of SNP:
|
SNP ID:
sf1121153666(Gbrowse)
Chromosome: chr11 Position: 21153666 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 93.76% | 6.24% |
| All Indica | 777 | 89.70% | 10.30% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 370 | 91.62% | 8.38% |
| Indica II | 203 | 83.74% | 16.26% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121153666 | G->A | LOC_Os11g36640(LOC_Os11g36640.1) | Synonymous |