Detailed information of SNP:
|
SNP ID:
sf1121154008(Gbrowse)
Chromosome: chr11 Position: 21154008 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1136 | 63.47% | 36.53% |
| All Indica | 584 | 41.44% | 58.56% |
| All Japonica | 459 | 94.12% | 5.88% |
| Aus | 51 | 49.02% | 50.98% |
| Indica I | 258 | 41.47% | 58.53% |
| Indica II | 161 | 47.83% | 52.17% |
| Indica Intermediate | 165 | 35.15% | 64.85% |
| Temperate Japonica | 321 | 96.88% | 3.12% |
| Tropical Japonica | 73 | 87.67% | 12.33% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 7 | 14.29% | 85.71% |
| Intermediate | 35 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121154008 | C->T | LOC_Os11g36640(LOC_Os11g36640.1) | Synonymous |