Detailed information of SNP:
|
SNP ID:
sf1121154120(Gbrowse)
Chromosome: chr11 Position: 21154120 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 95.76% | 4.24% |
| All Indica | 783 | 95.40% | 4.60% |
| All Japonica | 490 | 96.53% | 3.47% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 368 | 95.65% | 4.35% |
| Indica II | 207 | 96.62% | 3.38% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 83.15% | 16.85% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121154120 | A->G | LOC_Os11g36640(LOC_Os11g36640.1) | Non-Synonymous SNP |