Detailed information of SNP:
|
SNP ID:
sf1121155743(Gbrowse)
Chromosome: chr11 Position: 21155743 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1324 | 92.15% | 7.85% |
| All Indica | 712 | 87.78% | 12.22% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 344 | 90.12% | 9.88% |
| Indica II | 186 | 85.48% | 14.52% |
| Indica Intermediate | 182 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121155743 | A->G | LOC_Os11g36640(LOC_Os11g36640.1) | INTRON |