Detailed information of SNP:
|
SNP ID:
sf1121156994(Gbrowse)
Chromosome: chr11 Position: 21156994 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 97.22% | 2.78% |
| All Indica | 782 | 96.93% | 3.07% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 205 | 96.10% | 3.90% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121156994 | G->A | LOC_Os11g36640(LOC_Os11g36640.1) | Synonymous |