Detailed information of SNP:
|
SNP ID:
sf1121157205(Gbrowse)
Chromosome: chr11 Position: 21157205 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1336 | 88.92% | 11.08% |
| All Indica | 721 | 80.58% | 19.42% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 338 | 77.51% | 22.49% |
| Indica II | 193 | 86.01% | 13.99% |
| Indica Intermediate | 190 | 80.53% | 19.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121157205 | G->A | LOC_Os11g36640(LOC_Os11g36640.1) | Non-Synonymous SNP |