Detailed information of SNP:
|
SNP ID:
sf1121158230(Gbrowse)
Chromosome: chr11 Position: 21158230 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 94.17% | 5.83% |
| All Indica | 751 | 91.88% | 8.12% |
| All Japonica | 496 | 97.98% | 2.02% |
| Aus | 60 | 93.33% | 6.67% |
| Indica I | 356 | 91.85% | 8.15% |
| Indica II | 204 | 92.65% | 7.35% |
| Indica Intermediate | 191 | 91.10% | 8.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121158230 | T->C | LOC_Os11g36640(LOC_Os11g36640.1) | Non-Synonymous SNP |