Detailed information of SNP:
|
SNP ID:
sf1121158926(Gbrowse)
Chromosome: chr11 Position: 21158926 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 96.49% | 3.51% |
| All Indica | 780 | 96.15% | 3.85% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 370 | 98.11% | 1.89% |
| Indica II | 208 | 93.75% | 6.25% |
| Indica Intermediate | 202 | 95.05% | 4.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 33.33% | 66.67% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121158926 | C->A | INTERGENIC | None |