Detailed information of SNP:
|
SNP ID:
sf1121180680(Gbrowse)
Chromosome: chr11 Position: 21180680 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 75.16% | 24.84% |
| All Indica | 775 | 94.97% | 5.03% |
| All Japonica | 485 | 38.76% | 61.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 94.26% | 5.74% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 201 | 94.03% | 5.97% |
| Temperate Japonica | 331 | 27.49% | 72.51% |
| Tropical Japonica | 90 | 90.00% | 10.00% |
| Japonica Intermediate | 64 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121180680 | A->G | INTERGENIC | None |