Detailed information of SNP:
|
SNP ID:
sf1121201145(Gbrowse)
Chromosome: chr11 Position: 21201145 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 73.15% | 26.85% |
| All Indica | 786 | 63.74% | 36.26% |
| All Japonica | 496 | 88.10% | 11.90% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 370 | 40.27% | 59.73% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 207 | 81.16% | 18.84% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121201145 | C->T | INTERGENIC | None |