Detailed information of SNP:
|
SNP ID:
sf1121204018(Gbrowse)
Chromosome: chr11 Position: 21204018 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 74.56% | 25.44% |
| All Indica | 789 | 65.78% | 34.22% |
| All Japonica | 495 | 88.48% | 11.52% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 369 | 42.01% | 57.99% |
| Indica II | 211 | 89.10% | 10.90% |
| Indica Intermediate | 209 | 84.21% | 15.79% |
| Temperate Japonica | 334 | 87.13% | 12.87% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121204018 | C->G | INTERGENIC | None |