Detailed information of SNP:
|
SNP ID:
sf1121205835(Gbrowse)
Chromosome: chr11 Position: 21205835 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1373 | 95.12% | 4.88% |
| All Indica | 764 | 92.67% | 7.33% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 58 | 94.83% | 5.17% |
| Indica I | 340 | 85.00% | 15.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121205835 | G->A | LOC_Os11g36700(LOC_Os11g36700.1) | INTRON |