Detailed information of SNP:
|
SNP ID:
sf1121207324(Gbrowse)
Chromosome: chr11 Position: 21207324 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 73.16% | 26.84% |
| All Indica | 792 | 63.76% | 36.24% |
| All Japonica | 497 | 87.73% | 12.27% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 372 | 41.40% | 58.60% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121207324 | A->G | INTERGENIC | None |