Detailed information of SNP:
|
SNP ID:
sf1121209102(Gbrowse)
Chromosome: chr11 Position: 21209102 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 73.80% | 26.20% |
| All Indica | 792 | 64.77% | 35.23% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 42.63% | 57.37% |
| Indica II | 209 | 89.95% | 10.05% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 86.87% | 13.13% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1121209102 | T->C | LOC_Os11g36719(LOC_Os11g36719.1) | Synonymous |